Milo Lin Lab

Blazek PJ, Venkatesh K, Lin MM. Automated discovery of algorithms from data. Nature Computational Science. 2024 DOI: 10.1038/s43588-024-00593-9

Sari L, Bali S, Joachimiak LA, Lin MM. Hairpin trimer transition state of amyloid fibril. Nature Communications. 2024 accepted

Lin MM. Genera efficiency relation for dissipative molecular machines. Proceedings of the Royal Society A. 2024 https://doi.org/10.1098/rspa.2023.0388

Manley LJ, Lin MM. Kinetic and thermodynamic allostery in the Ras protein family. Biophysical Journal. 2023, 122: 3882-3893

Nielsen AW*, Sari L*, Fraser R, Lin MM. Protein aggregates thermodynamically order regardless of sequence. Proteins: Structure, Function, and Bioinformatics. 2023, 91(5): 705-711.

Lin MM. A general efficiency relation for molecular machines. arXiv 2022, doi: https://doi.org/10.48550/arXiv.2210.04380

Lin MM. Thermodynamic force thresholds biomolecular behavior. arXiv 2022, doi: https://doi.org/10.48550/arXiv.2209.09372

Rizo J, Sari L, Qi Y, Im W, Lin MM. All-atom molecular dynamics simulations of Synaptotagmin-SNARE-complexin complexes bridging a vesicle and a flat lipid bilayer. Elife. 2022, 11. doi: 10.7554/eLife.76356. 

Di Salvo ME, Reynolds KA, Lin MM. Resonant fluctuations of selection pressure exponentially accelerate fitness valley crossing. bioRxiv 2022, doi: https://doi.org/10.1101/2022.01.03.474754

Blazek PJ, Venkatesh K, Lin MM. Deep Distilling: automated code generation using explainable deep learning. arXiv 2021, doi: https://doi.org/10.48550/arXiv.2111.08275

Blazek PJ, Lin MM. Explainable neural networks that simulate reasoning. Nature Computational Science 2021, 1(9):607-618.

Fan W, Mar KB, Sari L, Gaszek IK, Cheng Q, Evers BM, Shelton JM, Wight-Carter M, Siegwart DJ, Lin MM, Schoggins JW. TRIM7 inhibits enterovirus replication and promotes emergence of a viral variant with increased pathogenicity. Cell. 2021, 184(13):3410-3425.e17. 

Lin MM. Circuit reduction of heterogeneous nonequilibrium systems. Physical Review Letters. 2020,125:218101.

Jermyn AS, Cao W, Elam WA, De La Cruz EM, Lin MM. Directional allosteric regulation of protein filament length. Physical review E. 2020, March; 101:032409.

Lu Y, Yoo BK, Ng AHC, Kim J, Yeom S, Tang J, Lin MM, Zewail AH, Heath JR. 4D electron microscopy of T cell activation. Proc Natl Acad Sci U S A. 2019, 116(44):22014-22019.

Chen D, Drombosky KW, Hou Z, Sari L, Kashmer OM, Ryder BD, Perez VA, Woodard DR, Lin MM, Diamond MI, Joachimiak LA. Tau local structure shields an amyloid-forming motif and controls aggregation propensity. Nat Commun. 2019, 10(1):2493.

Lin MM. Leveraging symmetry to predict self-assembly of multiple polymers. Chemical physics letters. 2017; 683:347.

Lin MM. Timing Correlations in Proteins Predict Functional Modules and Dynamic Allostery. J Am Chem Soc. 2016, 138(15):5036-43. 

Shenker J, Lin MM. Conditional activity predicts the functional behavior of the gene regulatory network of the lambda-phage infection cycle. Frontiers in plant science. 2015, 6(214).

Lin MM, Zewail AH. Hydrophobic forces and the length limit of foldable protein domains. Proc Natl Acad Sci USA 2012, 109(25):9851-6.