Manley LJ, Lin MM. Kinetic and thermodynamic allostery in the Ras protein family. bioRxiv 2022, doi:

Lin MM. A general efficiency relation for molecular machines. arXiv 2022, doi:

Lin MM. Thermodynamic force thresholds biomolecular behavior. arXiv 2022, doi:

Rizo J, Sari L, Qi Y, Im W, Lin MM. All-atom molecular dynamics simulations of Synaptotagmin-SNARE-complexin complexes bridging a vesicle and a flat lipid bilayer. Elife. 2022, 11. doi: 10.7554/eLife.76356. 

Di Salvo ME, Reynolds KA, Lin MM. Resonant fluctuations of selection pressure exponentially accelerate fitness valley crossing. bioRxiv 2022, doi:

Blazek PJ, Venkatesh K, Lin MM. Deep Distilling: automated code generation using explainable deep learning. arXiv 2021, doi:

Blazek PJ, Lin MM. Explainable neural networks that simulate reasoning. Nature computational science 2021, 1(9):607.

Fan W, Mar KB, Sari L, Gaszek IK, Cheng Q, Evers BM, Shelton JM, Wight-Carter M, Siegwart DJ, Lin MM, Schoggins JW. TRIM7 inhibits enterovirus replication and promotes emergence of a viral variant with increased pathogenicity. Cell. 2021, 184(13):3410-3425.e17. 

Lin MM. Circuit reduction of heterogeneous nonequilibrium systems. Physical review letters 2020,125:218101.

Nielsen AW, Sari L, Lin MM. All protein aggregates will thermodynamically order. bioRxiv 2020, doi:

Jermyn AS, Cao W, Elam WA, De La Cruz EM, Lin MM. Directional allosteric regulation of protein filament length. Physical review E. 2020, March; 101:032409.

Lu Y, Yoo BK, Ng AHC, Kim J, Yeom S, Tang J, Lin MM, Zewail AH, Heath JR. 4D electron microscopy of T cell activation. Proc Natl Acad Sci U S A. 2019, 116(44):22014-22019.

Chen D, Drombosky KW, Hou Z, Sari L, Kashmer OM, Ryder BD, Perez VA, Woodard DR, Lin MM, Diamond MI, Joachimiak LA. Tau local structure shields an amyloid-forming motif and controls aggregation propensity. Nat Commun. 2019, 10(1):2493.

Lin MM. Leveraging symmetry to predict self-assembly of multiple polymers. Chemical physics letters. 2017; 683:347.

Lin MM. Timing Correlations in Proteins Predict Functional Modules and Dynamic Allostery. J Am Chem Soc. 2016, 138(15):5036-43. 

Shenker J, Lin MM. Conditional activity predicts the functional behavior of the gene regulatory network of the lambda-phage infection cycle. Frontiers in plant science. 2015, 6(214).

Lin MM, Zewail AH. Hydrophobic forces and the length limit of foldable protein domains. Proc Natl Acad Sci USA 2012, 109(25):9851-6.